2015
Soybean breeding and genetics research for Nebraska
Contributor/Checkoff:
Category:
Sustainable Production
Keywords:
GeneticsGenomics
Lead Principal Investigator:
George Graef, University of Nebraska
Co-Principal Investigators:
James Specht, University of Nebraska
Project Code:
701
Contributing Organization (Checkoff):
Institution Funded:
Brief Project Summary:

The focus of this research project is soybean breeding and variety development. The research and variety development focus is on improving soybean yield in Nebraska production environments. The program also involves identifying genes and genomic regions that affect important traits like yield, disease resistance, and compositional quality that all impact performance and value for the farmer.

During 2013, three soybean lines were commercialized from the breeding program to seed suppliers and a major license agreement was issued to a major soybean seed company for access to soybean breeding lines and populations from our program. The research team had 58 total entries in the USDA Uniform...

Unique Keywords:
#breeding & genetics
Information And Results
Project Deliverables

Soybean varieties with improved yield, disease resistance, and compositional quality for Nebraska production environments.
Q1: Complete all post-harvest processing of seed samples from 2014 plots. We have plans for increase plots for 30 new high-yield lines going to their first year of regional testing, 10 purification blocks for high-yield lines that were advanced from 2014 regional tests, and 5 breeder seed increases for high-yield lines that are in advanced regional testing. We also will meet with Foundation Seed (Husker Genetics), NuPride, and Crop Improvement to coordinate foundation seed production of new high-yield varieties for 2015. We are making over 100 new crosses in the Puerto Rico crossing nursery and advancing generations from 2013 and 2014 crosses that will be returned to Lincoln for 2015 planting. All normal activities will continue for all phases of the program.

Q2: We will complete preparations for planting, which includes 12 Nebraska locations for yield, SCN, and IDC evaluations for 25,000 yield plots, 13,000 progeny rows, and over 150 F1, F2, F3, and F4 populations in our research and variety development pipeline. Installation of a new, underground drip irrigation system in the field we use at the Mead Agronomy Farm will be completed in April to cover approximately 25 acres that we use for our high-yield evaluations for MG1 and MG2 tests, rotating half the area each year with bulk corn. This is the first large-scale installation of an underground drip system at ARDC. We used surface drip for the last two years, which greatly improved uniformity and precision of irrigation in our research plots, providing high quality data. We look forward to success with this permanent installation. We will continue with the surface drip system at the Lincoln research farm.

Q3: During July-September we will collect and analyze the IDC data on our advanced experimental lines and IDC research plots. We also evaluate lines from all regional tests and the Quality Traits tests. There are good IDC symptoms at both locations this year and we should get good data.
We also will begin data collection on yield test plots, complete crossing for all objectives, and begin harvest of nursery and some yield test plots during September.

Q4: Complete harvest of 30,000 advanced yield test plots at 12 Nebraska locations. Complete data collection and analysis for both field data and post-harvest data, including seed composition.

Send F2 and F3 populations to Puerto Rico nursery for planting before the end of October, for 2-generation advance.

Send 10,000 progeny rows to Chile nurseries by November 15 for planting.

Complete M.S. thesis of Samantha McConaughy, December 2015, related to soybean seed composition traits and gene mapping.

Make selections for Puerto Rico crossing and ship seeds for planting by the end of December.

Final Project Results

Update:
We completed collection of IDC scores on over 6,000 plots at two Nebraska locations – Valley and North Bend. The Valley location was relatively mild, but still had good variation in scores for the material tested, ranging from a score of 1 (=no IDC symptoms) to 9 (dead meristem or plant). The North Bend location, as usual, was much more severe for IDC. Still, some lines had scores of 1 or 2, showing very high tolerance to IDC. Average IDC scores across locations (6 to 8 reps total) ranged from a low of 3.6 to a high of 8.3.
We completed our crossing objectives during July and early August for yield, SCN, seed composition, and other objectives. Hybrid seeds were harvested in September and planted in the lighted area at our Puerto Rico nursery during the last week of September. They are growing well. Plots at all locations escaped major hail and heavy rain damage, and looked really good throughout the season. We began data collection on plots in early September with some early maturity notes. Harvest began at the end of September. Many yields at the Cotesfield location, for our MG1 and MG2 lines, were over 100 bushels. We will complete harvest at the end of October for 30,000 advanced yield test plots at 10 Nebraska locations, and work on post-harvest data collection for seed traits, data analyses and summaries during November and early December. It looks like we have very good data for our Nebraska tests.
We began harvest of nearly 30,000 individual plants from populations developed from 2014 crosses. Those plants will be threshed individually and about 10,000 will go to the Chile nurseries in November. Selected lines will be harvested in March 2016 and come back to Nebraska for multi-location yield testing.
We grew increase plots, purification row plots, and breeder seed increases for new lines that are potential new soybean varieties from our program. In addition, Foundation Seed grew foundation seed increases of four of our conventional varieties, including U11-614093. That is a mid-Group 3 line that is high yielding in rainfed and irrigated production in Nebraska and across the north central region.
Our research on seed compositional quality continues with multiple projects, including one graduate student research project that is nearing completion, identifying genomic regions in soybean that are important in determining protein, oil, and carbohydrate concentration in the seed. We have thousands of recombinant inbred lines in multiple populations, and have identified some unique seed compositions, with increases in total protein and oil, and decreased total carbohydrates.

From October 2014 through September 2015 we shared seeds from over 60 of our new high-yield lines for testing and evaluation by companies, USDA, and other universities through Material Transfer Agreements (MTAs) for evaluation and crossing.

We continue to make great progress improving yield in soybeans for our Nebraska production environments and across the north central region. Results of the 2014 USDA Uniform Soybean Tests (published January 2015) across the region showed Nebraska lines at the top of the tests for maturity group I, II, and III. The top 9 lines in the MG 1 test were Nebraska lines. Two of those top lines also have good SCN resistance and were evaluated in the regional SCN tests as well, where they were #1 and #2 in both infested and non-infested tests. We also had 5 of the top 10 lines in the MG 1 prelim test. The top two lines in the MG2 test were Nebraska lines, as well as 6 of the top 10. In the Prelim II B test, Nebraska lines were #1 and #2, as well as 7 of the top 10. Several of the lines in MG1 and MG2 have excellent phytophthora stem rot resistance as well. We have two high-yield lines in the MG3 advanced test that also have good phytophthora resistance. In the Prelim 3 test, we have the #1 yielding line as well as 6 of the top 10 in that test. The #1 group 3 lines in the prelim test is U11-614093. This line was #1 in every test we have grown since it was first tested. It was #1 in the 2011 Nebraska preliminary tests -- its first test out of progeny rows. It was #1 in our 2012 multi- location tests in Nebraska, as well as the 2011-12 2-year average. It was the #1 group 3 line in our 2013 and 2014 V tests in Nebraska, and now is #1 in the 2014 Regional tests. This line was in Foundation Seed production during 2015. Our breeding program produced 40-50 bushels of breeder seed during 2014. We have good progress on all objectives.

We advanced 66 lines in the 2015 USDA Uniform Regional Tests and four lines in the SCN tests. For advanced lines in the increase and purification process, we grew 29 increase plots, 10 variety purification plots, and 5 breeder seed increase plots. In addition, four of our advanced lines from 2014 were in Foundation Seed production during 2015.

We continue to identify and confirm genomic regions important in determining seed compositional quality – protein and oil concentration – and their interactions with yield and important agronomic traits. We identified new gene regions with important effects on seed oil concentration. From that study, new soybean germplasm lines with more than 26% seed oil on a dry matter basis were also identified. We continue to make progress in the high protein populations, and currently have soybean lines that average 60% protein on a dry matter basis. That was confirmed this summer with wet lab results from the University of Missouri lab. There is no other report of 60% protein in soybean seeds.

The United Soybean Research Retention policy will display final reports with the project once completed but working files will be purged after three years. And financial information after seven years. All pertinent information is in the final report or if you want more information, please contact the project lead at your state soybean organization or principal investigator listed on the project.