2021
Resistance of Soybean Cultivars to a New Root-Lesion Nematode Species in ND
Contributor/Checkoff:
Category:
Sustainable Production
Keywords:
NematodePest
Parent Project:
This is the first year of this project.
Lead Principal Investigator:
Guiping Yan, North Dakota State University
Co-Principal Investigators:
Project Code:
QSSB
Contributing Organization (Checkoff):
Institution Funded:
Brief Project Summary:

Soil samples collected from a soybean field in Richland County contained root-lesion nematodes, which differ from other known species of root-lesion nematodes in morphology and DNA sequences. The found isolate represents a new root-lesion nematode species that has never been reported. Twenty soybean cultivars were evaluated for resistance to the new species and the resistance levels of other soybean cultivars to this species are unknown. Project goals include evaluating 10 additional soybean cultivars to determine resistance levels to this new species; and developing a real-time PCR assay to detect and quantify this root-lesion nematode species directly in DNA extracts from field soil.

Key Benefactors:
farmers, agronomists, extension specialists

Information And Results
Project Deliverables

The resistance or susceptibility of ten soybean cultivars to this new root-lesion nematode species detected in ND will be disclosed. A new molecular diagnostic system will be developed and validated to detect and quantify this new species directly in DNA extracts of field soil.

Final Project Results

Update:

View uploaded report Word file

RESISTANCE OF SOYBEAN CULTIVARS TO A NEW ROOT-LESION NEMATODE SPECIES IN NORTH DAKOTA

EXECUTIVE SUMMARY

NORTH DAKOTA SOYBEAN COUNCIL
JUNE, 2021

Dr. Guiping Yan, Principal Investigator, Dept. Plant Pathology, NDSU

Research Conducted
Ten soybean cultivars used in ND were evaluated for resistance to a new root-lesion nematode (RLN) species recently discovered in a ND soybean field. The experiment was conducted under greenhouse conditions (Fig. 1A) and repeated to confirm research findings. A quantitative real-time PCR (qPCR) assay was developed to detect and quantify this new species in DNA extracts of field soil. Primers were tested for specificity and detection sensitivity was determined. A standard curve was generated. The qPCR assay was validated by comparing the numbers of nematodes in 15 field soil samples obtained by traditional microscopic counting and qPCR through correlation analysis.

Why the research is important to ND soybean farmers
Root-lesion nematodes are one of the most important groups of plant-parasitic nematodes. During our previous soil surveys in ND, a new RLN species was identified. In 2021, this new species was named as Pratylenchus dakotaensis, paying homage to the state in which it was discovered. RLNs have a wide host range including soybean. One of the most economical and effective ways to control RLNs is the use of cultivar resistance. This research aims to provide valuable information about resistance levels of soybean cultivars in ND to manage the new species, and an efficient DNA-based, qPCR assay for improving nematode detection to facilitate management strategies.

Final findings of the research
Resistance rating results were consistent between two trials. Although none of the cultivars tested were resistant or moderately resistant, three were found to be moderately susceptible and the remaining seven were susceptible (Fig. 1B). A new qPCR assay was developed for detection and quantification of this new species in DNA extracts of field soils. The assay was highly specific and sensitive, and had a high correlation between the numbers of nematodes in field soil samples determined through manual counting and qPCR (Fig. 2). This is the first report for detection and quantification of this species directly from field soil DNA.

Benefits/Recommendations to North Dakota soybean farmers and industry
Such research findings provide an insight into the virulence of the new RLN species on commercial soybean cultivars. Moderately susceptible cultivars identified may perform better than the susceptible cultivars. However, further research is necessary to find better performing resistant cultivars. The qPCR assay developed provides a rapid and efficient method for P. dakotaensis quantification in soil DNA and can serve as a valuable diagnostic tool for providing informed decisions to growers.

Fig. 1. A: soybean plants grown in a growth chamber maintained at 22 °C for resistance evaluation to the new root-lesion nematode species (Pratylenchus dakotaensis) identified in ND. B: classification of the resistance responses of ten soybean cultivars to this new species based on the two trials.

Fig. 2. Relationship between the numbers of Pratylenchus dakotaensis determined by qPCR and traditional microscopic counting method from 15 naturally infested field soil samples.


The United Soybean Research Retention policy will display final reports with the project once completed but working files will be purged after three years. And financial information after seven years. All pertinent information is in the final report or if you want more information, please contact the project lead at your state soybean organization or principal investigator listed on the project.